Published in Nature chemical biology, 2024
ISBN: 1552-4450 Publisher: Nature Publishing Group US New York
Recommended citation: Guangcai Xu, Daniele Torri, Sebastian Cuesta-Hoyos, Deepanjan Panda, Luke Yates, Rémi Zallot, Kehan Bian, Dongxu Jia, Andreea Iorgu, Colin Levy. "Cryptic enzymatic assembly of peptides armed with β-lactone warheads." Nature chemical biology, 2024.
Published in Microbiology and Molecular Biology Reviews, 2024
ISBN: 1098-5557 Publisher: American Society for Microbiology 1752 N St., NW, Washington, DC
Recommended citation: Valérie Crécy-Lagard, Geoffrey Hutinet, José Cediel-Becerra, Yifeng Yuan, Rémi Zallot, Marc Chevrette, RM Ratnayake, Marshall Jaroch, Samia Quaiyum, Steven Bruner. "Biosynthesis and function of 7-deazaguanine derivatives in bacteria and phages." Microbiology and Molecular Biology Reviews, 2024.
Published in ACS Bio & Med Chem Au, 2024
ISBN: 2694-2437 Publisher: American Chemical Society
Recommended citation: Mochen Dong, Zhuoyun Chen, Yuan He, Rémi Zallot, Yi Jin. "Bioinformatics-facilitated identification of novel bacterial sulfoglycosidases that hydrolyze 6-Sulfo-N-acetylglucosamine." ACS Bio & Med Chem Au, 2024.
Published in Journal of molecular biology, 2023
ISBN: 0022-2836 Publisher: Academic Press
Recommended citation: Nils Oberg, Rémi Zallot, John Gerlt. "EFI-EST, EFI-GNT, and EFI-CGFP: enzyme function initiative (EFI) web resource for genomic enzymology tools." Journal of molecular biology, 2023.
Published in ACS Catalysis, 2022
ISBN: 2155-5435 Publisher: American Chemical Society
Recommended citation: Zhen Zhang, Mochen Dong, Rémi Zallot, George Blackburn, Nini Wang, Chengjian Wang, Long Chen, Patrick Baumann, Zuyan Wu, Zhongfu Wang. "Mechanistic and structural insights into the specificity and biological functions of bacterial sulfoglycosidases." ACS Catalysis, 2022.
Published in Biochemistry, 2021
ISBN: 0006-2960 Publisher: American Chemical Society
Recommended citation: Qiang Li, Rémi Zallot, Brian MacTavish, Alvaro Montoya, Daniel Payan, You Hu, John Gerlt, Alexander Angerhofer, Valérie Crécy-Lagard, Steven Bruner. "Epoxyqueuosine reductase QueH in the biosynthetic pathway to tRNA queuosine is a unique metalloenzyme." Biochemistry, 2021.
Published in Current opinion in biotechnology, 2021
ISBN: 0958-1669 Publisher: Elsevier Current Trends
Recommended citation: Remi Zallot, Nils Oberg, John Gerlt. "Discovery of new enzymatic functions and metabolic pathways using genomic enzymology web tools." Current opinion in biotechnology, 2021.
Published in Biochemistry, 2019
ISBN: 0006-2960 Publisher: American Chemical Society
Recommended citation: Rémi Zallot, Nils Oberg, John Gerlt. "The EFI web resource for genomic enzymology tools: leveraging protein, genome, and metagenome databases to discover novel enzymes and metabolic pathways." Biochemistry, 2019.
Published in Proceedings of the National Academy of Sciences, 2019
ISBN: 0027-8424 Publisher: National Academy of Sciences
Recommended citation: Yifeng Yuan, Rémi Zallot, Tyler Grove, Daniel Payan, Isabelle Martin-Verstraete, Sara Šepić, Seetharamsingh Balamkundu, Ramesh Neelakandan, Vinod Gadi, Chuan-Fa Liu. "Discovery of novel bacterial queuine salvage enzymes and pathways in human pathogens." Proceedings of the National Academy of Sciences, 2019.
Published in Bioinformatics, 2018
ISBN: 1367-4803 Publisher: Oxford University Press
Recommended citation: Katherine Harrison, Valérie Crécy-Lagard, Rémi Zallot. "Gene Graphics: a genomic neighborhood data visualization web application." Bioinformatics, 2018.
Published in Nature chemical biology, 2018
ISBN: 1552-4450 Publisher: Nature Publishing Group US New York
Recommended citation: Michael Carter, Xinshuai Zhang, Hua Huang, Jason Bouvier, Brian Francisco, Matthew Vetting, Nawar Al-Obaidi, Jeffrey Bonanno, Agnidipta Ghosh, Rémi Zallot. "Functional assignment of multiple catabolic pathways for D-apiose." Nature chemical biology, 2018.
Published in Current opinion in chemical biology, 2018
ISBN: 1367-5931 Publisher: Elsevier Current Trends
Recommended citation: Rémi Zallot, Nils Oberg, John Gerlt. "‘Democratized’genomic enzymology web tools for functional assignment." Current opinion in chemical biology, 2018.
Published in Biomolecules, 2017
ISBN: 2218-273X Publisher: MDPI
Recommended citation: Rémi Zallot, Yifeng Yuan, Valérie Crécy-Lagard. "The Escherichia coli COG1738 member YhhQ is involved in 7-cyanodeazaguanine (preQ0) transport." Biomolecules, 2017.
Published in ACS chemical biology, 2017
ISBN: 1554-8929 Publisher: American Chemical Society
Recommended citation: Rémi Zallot, Robert Ross, Wei-Hung Chen, Steven Bruner, Patrick Limbach, Valérie Crécy-Lagard. "Identification of a novel epoxyqueuosine reductase family by comparative genomics." ACS chemical biology, 2017.
Published in BMC genomics, 2016
Publisher: BioMed Central
Recommended citation: Christopher Henry, Claudia Lerma-Ortiz, Svetlana Gerdes, Jeffrey Mullen, Ric Colasanti, Aleksey Zhukov, Océane Frelin, Jennifer Thiaville, Rémi Zallot, Thomas Niehaus. "Systematic identification and analysis of frequent gene fusion events in metabolic pathways." BMC genomics, 2016.
Published in Life, 2016
ISBN: 2075-1729 Publisher: MDPI
Recommended citation: Rémi Zallot, Katherine Harrison, Bryan Kolaczkowski, Valérie Crécy-Lagard. "Functional annotations of paralogs: a blessing and a curse." Life, 2016.
Published in Biochemical Journal, 2016
ISBN: 0264-6021 Publisher: Portland Press Ltd.
Recommended citation: Ghulam Hasnain, Sanja Roje, Na Sa, Rémi Zallot, Michael Ziemak, Valérie Crécy-Lagard, Jesse Gregory, Andrew Hanson. "Bacterial and plant HAD enzymes catalyse a missing phosphatase step in thiamin diphosphate biosynthesis." Biochemical Journal, 2016.
Published in The Plant Cell, 2016
ISBN: 1532-298X Publisher: American Society of Plant Biologists
Recommended citation: Manaki Mimura, Rémi Zallot, Thomas Niehaus, Ghulam Hasnain, Satinder Gidda, Thuy Nguyen, Erin Anderson, Robert Mullen, Greg Brown, Alexander Yakunin. "Arabidopsis TH2 encodes the orphan enzyme thiamin monophosphate phosphatase." The Plant Cell, 2016.
Published in Nature Chemical Biology, 2016
ISBN: 1552-4450 Publisher: Nature Publishing Group US New York
Recommended citation: Lili Huang, Anna Khusnutdinova, Boguslaw Nocek, Greg Brown, Xiaohui Xu, Hong Cui, Pierre Petit, Robert Flick, Remi Zallot, Kelly Balmant. "A family of metal-dependent phosphatases implicated in metabolite damage-control." Nature Chemical Biology, 2016.
Published in Journal of Biological Chemistry, 2015
ISBN: 0021-9258 Publisher: Elsevier
Recommended citation: Ekaterina Kuznetsova, Boguslaw Nocek, Greg Brown, Kira Makarova, Robert Flick, Yuri Wolf, Anna Khusnutdinova, Elena Evdokimova, Ke Jin, Kemin Tan. "Functional diversity of haloacid dehalogenase superfamily phosphatases from Saccharomyces cerevisiae: biochemical, structural, and evolutionary insights." Journal of Biological Chemistry, 2015.
Published in Biochemical Journal, 2014
ISBN: 0264-6021 Publisher: Portland Press Ltd.
Recommended citation: Rémi Zallot, Mohammad Yazdani, Aymeric Goyer, Michael Ziemak, Jiahn-Chou Guan, Donald McCarty, Valérie Crécy-Lagard, Svetlana Gerdes, Timothy Garrett, Jordi Benach. "Salvage of the thiamin pyrimidine moiety by plant TenA proteins lacking an active-site cysteine." Biochemical Journal, 2014.
Published in ACS chemical biology, 2014
ISBN: 1554-8929 Publisher: American Chemical Society
Recommended citation: Rémi Zallot, Céline Brochier-Armanet, Kirk Gaston, Farhad Forouhar, Patrick Limbach, John Hunt, Valérie Crécy-Lagard. "Plant, animal, and fungal micronutrient queuosine is salvaged by members of the DUF2419 protein family." ACS chemical biology, 2014.
Published in Proceedings of the National Academy of Sciences, 2014
ISBN: 0027-8424 Publisher: National Academy of Sciences
Recommended citation: Samuel Seaver, Svetlana Gerdes, Océane Frelin, Claudia Lerma-Ortiz, Louis Bradbury, Rémi Zallot, Ghulam Hasnain, Thomas Niehaus, Basma El, Shiran Pasternak. "High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource." Proceedings of the National Academy of Sciences, 2014.
Published in Phytochemistry, 2013
ISBN: 0031-9422 Publisher: Pergamon
Recommended citation: Mohammad Yazdani, Rémi Zallot, Meral Tunc-Ozdemir, Valérie Crécy-Lagard, David Shintani, Andrew Hanson. "Identification of the thiamin salvage enzyme thiazole kinase in Arabidopsis and maize." Phytochemistry, 2013.
Published in Plant physiology, 2013
ISBN: 1532-2548 Publisher: American Society of Plant Biologists
Recommended citation: Rémi Zallot, Gennaro Agrimi, Claudia Lerma-Ortiz, Howard Teresinski, Océane Frelin, Kenneth Ellens, Alessandra Castegna, Annamaria Russo, Valérie Crécy-Lagard, Robert Mullen. "Identification of mitochondrial coenzyme a transporters from maize and Arabidopsis." Plant physiology, 2013.
Published in The Arabidopsis book/American Society of Plant Biologists, 2013
Publisher: American Society of Plant Biologists
Recommended citation: Yonghua Li-Beisson, Basil Shorrosh, Fred Beisson, Mats Andersson, Vincent Arondel, Philip Bates, Sébastien Baud, David Bird, Allan DeBono, Timothy Durrett. "Acyl-lipid metabolism." The Arabidopsis book/American Society of Plant Biologists, 2013.
Published in , 2011
Recommended citation: Rémi Zallot. "Identification et caractérisation d'une lipase exprimée pendant l'hydrolyse des réserves chez Arabidopsis thaliana." , 2011.
Published in American Society of Plant Biologists, 2010
Recommended citation: Y. Li-Beisson, B. Shorrosh, F. Beisson, M. Andersson, V. Arondel, P. Bates, S. Baud, D. Bird, A. DeBono, T. Durrett. "The arabidopsis book." American Society of Plant Biologists, 2010.
Published in Plant physiology, 2010
ISBN: 1532-2548 Publisher: American Society of Plant Biologists
Recommended citation: Fabienne Furt, Sabine König, Jean-Jacques Bessoule, Françoise Sargueil, Rémi Zallot, Thomas Stanislas, Elodie Noirot, Jeanine Lherminier, Françoise Simon-Plas, Ingo Heilmann. "Polyphosphoinositides are enriched in plant membrane rafts and form microdomains in the plasma membrane." Plant physiology, 2010.